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References to SVI software


Quite many scientific papers mention SVI's Software. The links below point to an selection of these papers. More information on our software can be found in those articles. If you used a SVI product in a publication we would highly appreciate it if you can fill out this form or send the reference to supportImage .


What follows are mostly references that Huygens users asked to be included here, but many others are available for example in Google Scholar(external link).




Remote management

A. Ponti, A. Gulati, V. Bäcker and P. Schwarb.
Huygens Remote Manager, a Web Interface for High-Volume Batch Deconvolution.
Imaging & Microscopy (2007) V 9, No. 2, pp 57-58.
unabridged version(external link) (distributed with permission)


Theoretical PSFs versus measured PSFs

Landmann, L.
Deconvolution improves colocalization analysis of multiple fluorochromes in 3D confocal data sets more than filtering techniques
Jo. Micr. (2002) V 208, Pt 2, pp 134-147

de Grauw CJ, Vroom JM, van der Voort HTM and Gerritsen HC
Imaging properties in two-photon excitation microscopy and effects of refractive-index mismatch in thick specimens
Applied Optics (1999) V 38, No.28, pp

Rothen-Rutishauser BM, Messerli MJ, van der Voort H, Guenthert M and Wunderli-Allenspach, H
Deconvolution Combined with Digital Colocalization Analysis to Study the Spatial Distribution of Tight and Adherens Junction Proteins
Jo. of Computer-Assisted Micr. (1998) V10 No. 3, pp 103-111

Kano H, van der Voort HTM, Schrader M, van Kempen GMP and Hell SW
Avalanche photodiode detection with object scanning and image restoration provides 2-4 fold resolution increase in two-photon fluorescence microscopy
Bioimaging 4 (1996) pp 187-197 get pdf(external link)


Huygens Analysis Tools (colocalization, object analysis...)

Dupuis J, Préfontaine A, Villeneuve L, Ruel N, Lefebvre F, Calderone A.
Bone marrow-derived progenitor cells contribute to lung remodelling after myocardial infarction.
Cardiovasc Pathol. 2007 Nov-Dec;16(6):321-8.
get pdf(external link)

Ch. Le Clainche, D. Schlaepfer, A. Ferrari1, M. Klingauf, K. Grohmanova1, A. Veligodskiy, D. Didry, D. Le, C. Egile, M.-F. Carlier, R. Kroschewski
IQGAP1 stimulates actin assembly through the N-WASP-ARP2/3 pathway.
J. Biol. Chem, 10.1074
get pdf(external link)

Landmann, L.
Deconvolution improves colocalization analysis of multiple fluorochromes in 3D confocal data sets more than filtering techniques
Jo. Micr. (2002) V 208, Pt 2, pp 134-147

Rothen-Rutishauser BM, Messerli MJ, van der Voort H, Guenthert M and Wunderli-Allenspach H
Deconvolution Combined with Digital Colocalization Analysis to Study the Spatial Distribution of Tight and Adherens Junction Proteins
Jo. of Computer-Assisted Micr. (1998) V10 No. 3, pp 103-111


Some references to the Visualization Tools

Maliba R, Brkovic A, Neagoe PE, Villeneuve LR, Sirois MG.
Angiopoietin-mediated endothelial P-selectin translocation: cell signaling
mechanisms.
J Leukoc Biol. 2007 Nov 5

A. Shavinskaya, S. Boulant, F. Penin, J. McLauchlan, and R. Bartenschlager
The lipid droplet binding domain of hepatitis C virus core protein is a major determinant for efficient virus assembly
J. Biol. Chem, 10.1074/get pdf(external link)

Noemi N. Taniwaki, Fabiana S. Machado, Andre R. Massensini, Renato A. Mortara
Trypanosoma cruzi disrupts myofibrillar organization and intracellular calcium levels in mouse neonatal cardiomyocytes
Cell Tissue Res (2006) artId 152

Bergsma CBJ, Streekstra GJ, Smeulders AWM and Manders EMM
Velocity Estimation of Spots in Three-Dimensional Confocal Image Sequences of Living Cells
Cytometry (2001) 43 pp 261-272

Noordmans HJ, van der Voort HTM and Smeulders AWM
Spectral Volume Rendering
IEEE Transactions On Visualization And Computer Graphics (2002) VOL. 6, NO. 3 pp 196-207

Noordmans HJ, Smeulders AWM and van der Voort HTM
Fast volume render techniques for interactive analysis
The Visual Computer (1997) 13 pp 345-358


Theses

Habermann FA (2000)
Untersuchungen zur Anordnung von Makro- und Mikrochromosomen im Zellkern embryonaler Fibroblasten und Neuronen von Gallus domesticus.
Dissertation zum Erwerb des Doktorgrades der Medizin an der Medizinischen Fakultät der Ludwig-Maximilians-Universität zu München.
get pdf(external link)

Verveer PJ (1998)
Computational and Optical Methods for Improving Resolution and Signal Quality in Fluorescence Microscopy. Technische Universiteit Delft. abstract and pdf(external link)


Papers referring to the use of Huygens


2014

Areti Pantazopouloua, Mario Pinara, Xin Xiang, and Miguel A. Peñalva (2014)
Maturation of late Golgi cisternae into RabE(RAB11) exocytic post-Golgi carriers visualized in vivo
Molecular Biology of the Cell. August 15, 2014 vol. 25 no. 16 2428-2443(external link)

Virginie Buggia-Prévot, Celia G Fernandez, Sean Riordan, Kulandaivelu S Vetrivel, Jelita Roseman, Jack Waters, Vytautas P Bindokas, Robert Vassar and Gopal Thinakaran
(2014)
Axonal BACE1 dynamics and targeting in hippocampal neurons: a role for Rab11 GTPase.
Molecular Neurodegeneration 2014, 9:1 doi:10.1186/1750-1326-9-1(external link)

Schiefermeier N, Scheffler JM, de Araujo ME, Stasyk T, Yordanov T, Ebner HL, Offterdinger M, Munck S, Hess MW, Wickström SA, Lange A, Wunderlich W, Fässler R, Teis D, Huber LA
(2014)
The late endosomal p14-MP1 (LAMTOR2/3) complex regulates focal adhesion dynamics during cell migration.
J Cell Biol. 2014 May 26;205(4):525-40(external link)

Thauerer B, Voegele P, Hermann-Kleiter N, Thuille N, de Araujo ME, Offterdinger M, Baier G, Huber LA, Baier-Bitterlich G.
(2014)
LAMTOR2-mediated modulation of NGF/MAPK activation kinetics during differentiation of PC12 cells.
PLoS One. 2014 Apr 21;9(4):e95863(external link)

Wijetunge LS, Angibaud J, Frick A, Kind PC, Nägerl UV
(2014)
Stimulated Emission Depletion (STED) Microscopy Reveals Nanoscale Defects in the Developmental Trajectory of Dendritic Spine Morphogenesis in a Mouse Model of Fragile X Syndrome.
J Neurosci, 5302-5313 (2014)(external link)

Freeman K, Tao W, Sun H, Soonpaa MH, Rubart M
(2014)
In situ three-dimensional reconstruction of mouse heart sympathetic innervation by two-photon excitation fluorescence imaging.
J Neuroscience methods 2014, Volume 221: 48–61(external link)
Huygens deconvolution and Huygens Colocalization Analyzer was used for this study

Saka SK, Vogts An, Kröhnert K, Hillion F, Rizzoli, SO, Wessels JT (2014)
Correlated optical and isotopic nanoscopy.
Nat Commun. 2014 Apr 10;5:3664(external link)

Zhang WI, Röhse H, Rizzoli SO, Opazo, F (2014)
Fluorescent in situ hybridization of synaptic proteins imaged with super-resolution STED microscopy.
published ahead of print April 10, 2014, Microsc. Res. Tech.. doi: 10.1002/jemt.22367(external link)

Mace EM, Orange JS (2014)
Lytic immune synapse function requires filamentous actin deconstruction by Coronin 1A. PNAS 2014;
published ahead of print April 23, 2014, doi:10.1073/pnas.1314975111(external link)

Mace, EM, Orange, JS
Visualization of the Immunological Synapse by Dual Color Time-gated Stimulated Emission Depletion (STED) Nanoscopy.
J. Vis. Exp. (85), e51100, doi:10.3791/51100 (2014)(external link).

Kuijk A, Imhof A, Verkuijlen MHW, Besseling TH, van Eck ERH, van Blaaderen A (2014)
Colloidal Silica Rods: Material Properties and Fluorescent Labeling. Part. Part. Syst. Charact.. doi: 10.1002/ppsc.201300329(external link)

Padman BS, Bach M, Ramm G (2014)
An Improved Procedure for Subcellular Spatial Alignment during Live-Cell CLEM.
PLoS ONE 9(4): e95967. 22 April 2014 doi: 10.1371/journal.pone.0095967(external link)

Bhuvanendran, S.; Salka, K.; Rainey, K.; Sreetama, S.C.; Williams, E.; Leeker, M.; Prasad, V.; Boyd, J.; Patterson, G.H.; Jaiswal, J.K.; Colberg-Poley, A.M.
Superresolution Imaging of Human Cytomegalovirus vMIA Localization in Sub-Mitochondrial Compartments.
Viruses 2014, 6, 1612-1636(external link).


Poenick S1, Jahnke HG, Eichler M, Frost S, Lilie H, Robitzki AA.
Comparative label-free monitoring of immunotoxin efficacy in 2D and 3D mamma carcinoma in vitro models by impedance spectroscopy.
Biosens Bioelectron. 2014 Mar 15;53:370-6. doi: 10.1016/j.bios.2013.09.048. Epub 2013 Sep 29.(external link)


2013


Symes A.J, Eilertsen M, Millar M, Nariculam J, Freeman A, Notara M, Feneley, Patel H.R.H, Masters J.R.W, Ahmed A.
Quantitative Analysis of BTF3, HINT1, NDRG1 and ODC1 Protein Over-Expression in Human Prostate Cancer Tissue
PLoS One 2013 Dec 27(external link)

Westhoff J.H, Giselbrecht S, Schmidts M, Schindler S, Beales P.L, Tönshoff B, Liebel U, Gehrig J.
Development of an Automated Imaging Pipeline for the Analysis of the Zebrafish Larval Kidney
PLoS One 2013 Dec 4;8(12)(external link)
This paper nicely shows that Huygens fits perfectly well in high content screening workflows and that Huygens deconvolution benefits image quality and further analysis

Kreutmayer S, Csordas A, Kern J, Maass V, Almanzar G, Offterdinger M, Öllinger R, Maass M, Wick G.
Chlamydia pneumoniae infection acts as an endothelial stressor with the potential to initiate the earliest heat shock protein.
Cell Stress Chaperones. 2013 May;18(3):259-68(external link)

Coelho PA, Bury L, Sharif B, Riparbelli MG, Fu J, Callaini G, Gloveremail DM, Zernicka-Goetzemail M.
Spindle Formation in the Mouse Embryo Requires Plk4 in the Absence of Centrioles
Developmental Cell 27:586–597, December 9, 2013(external link)
Cover image of the issue was also deconvolved with Huygens Professional

Castañeda V, Cerda M, Santibañez F, Jara J, Pulgar E, Palma K, Lemus CG, Concha M, Hartel S.
Computational Methods for Analysis of Dynamic Events In Cell Migration
Current Molecular Medicine, 2013 - accepted(external link)

Wang XD, Su YA, Wagner KV, Avrabos C, Scharf SH, Hartmann J, Wolf M, Liebl C, Kühne C, Wurst W, Holsboer F, Eder M, Deussing JM, Müller MB, Schmidt MV.
Nectin-3 links CRHR1 signaling to stress-induced memory deficits and spine loss.
Nat Neurosci. 2013 Jun;16(6):706-13. Epub 2013 May 5.(external link)

Anje Sporbert, Zoltan Cseresnyes, Meike Heidbreder, Petra Domaing, Stefan Hauser, Barbara Kaltschmidt, Christian Kaltschmidt, Mike Heilemann, Darius Widera.
Simple Method for Sub-Diffraction Resolution Imaging of Cellular Structures on Standard Confocal Microscopes by Three-Photon Absorption of Quantum Dots.
PLoS One, 2013 May 21;8(5):e64023(external link)

Alireza Ghamari1, Mariëtte P.C. van de Corput, Supat Thongjuea, Wiggert A. van Cappellen, Wilfred van IJcken,Jeffrey van Haren,Eric Soler,Dirk Eick,Boris Lenhard and Frank G. Grosveld.
In vivo live imaging of RNA polymerase II transcription factories in primary cells.
Genes&Development, Accepted March 18, 2013(external link)

Lukinavicius G., Umezawa K., Olivier N., Honigmann A., Yang G., Plass T., Mueller V., Reymond L., Corrêa Jr. I.R., Luo Z-G., Schultz G., Lemke E.A., Heppenstall P., Eggeling C., Manley S., Johnsson K.
A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins.
Nature Chemistry 5, 132–139 (2013)(external link)

Lukinavicius G., Lavogina D., Orpinell M., Umezawa K., Reymond L., Garin N., Gönczy P., Johnsson K.
Selective Chemical Crosslinking Reveals a Cep57-Cep63-Cep152 Centrosomal Complex.
Current Biology, 17 January 2013(external link)


2012


Trcek T, Chao J.A., Larson D.R.,Park H.Y., Zenklusen D., Shenoy S.M., Singer R.H.
Single-mRNA counting using fluorescent in situ hybridization in budding yeast.
Nature Protocols 7, 408–419 (2012)(external link)

Malide D, Metais J-Y, Dunbar C.E.
Dynamic clonal analysis of murine hematopoietic stem and progenitor cells marked by five fluorescent proteins using confocal and multiphoton microscopy.
Blood Sept. 2012, 440636(external link)

Micutkova L, Hermann M, Offterdinger M, Hess MW, Matscheski A, Pircher H, Mück C, Ebner HL, Laich A, Ferrando-May E, Zwerschke W, Huber LA, Jansen-Dürr P.
Analysis of the cellular uptake and nuclear delivery of insulin-like growth factor binding protein-3 in human osteosarcoma cells.
Int J Cancer. 2012 Apr 1;130(7):1544-57(external link)

Lalle M, Camerini S, Cecchetti S, Sayadi A, Crescenzi M, Pozio E.
Interaction network of the 14-3-3 protein in the ancient protozoan parasite Giardia duodenalis.
J Proteome Res. 2012 May 4;11(5):2666-2683(external link)

Mariëtte P. C. van de Corput, Ernie de Boer, Tobias A. Knoch, Wiggert A. van Cappellen, Adrian Quintanilla,Leanna Ferrand, Frank G. Grosveld.
Super-resolution imaging reveals 3D folding dynamics of the β-globin locus upon gene activation
Journal of Cell Science 108522; Advance Online Publication July 5, 2012(external link)

F Spira, NS Mueller, G Beck, P von Olshausen, J Beig, R Wedlich-Söldner.
Patchwork organization of the yeast plasma membrane into numerous coexisting domains.
Nature Cell Biology April 29, 2012 vol. 14(6):640-648(external link)

Farideh Beigi et al.
Dynamic denitrosylation via S-nitrosoglutathione reductase regulates cardiovascular function.
PNAS March 13, 2012 vol. 109 no. 11 4314-4319(external link)

W. Tao, J. Shi, G.W. Dorn, L. Wei. M Rubart
Spatial variability in T-tubule and electrical remodeling of left ventricular epicardium in mouse hearts with transgenic Gαq overexpression-induced pathological hypertrophy.
J Mol Cell Cardiol. Jun 21, 2012(external link) Epub ahead of print

T. Moutinho-Santos, C. Conde, C.E. Sunkel
POLO ensures chromosome bi-orientation by preventing and correcting erroneous chromosome-spindle attachments.
J. Cell Sci. 2012 Feb 1;125(Pt 3):576-583(external link)

É.R. Ferreira, A. Bonfim-Melo, R.A. Mortara, D. Bahia
Trypanosoma cruzi extracellular amastigotes and host cell signaling: more pieces to the puzzle.
Front. Immun., 30 Nov 2012, 3:1-6(external link)

J-P. Vilardaga, T.J. Gardella, V.L. Wehbi, T.N. Feinstein
Non-canonical signaling of the PTH receptor.
Trends in Pharmacological Sciences, 18 June 2012
Trends in Pharmacological Sciences August issue(external link). Online 18 June 2012
The cover of this issue shows a Huygens deconvolved and alpha blended three-color live endosome.



2011


N Hégarat, E Smith, G Nayak, S Takeda, PA Eyers, H Hochegger.
Aurora A and Aurora B jointly coordinate chromosome segregation and anaphase microtubule dynamics. Includes cover image that was deconvolved with Huygens.
J Cell Biol. 2011 Dec 26;195(7):1103-13(external link)

Lalle M, Rosati MA, Bien J, Hehl AB, Pozio E, Tosini F.
Expression of Cryptosporidium parvum Cpa135/CpCCP1 chimeras in Giardia duodenalis: Organization of the protein domains affects the protein secretion pathway.
Exp Parasitol. 2011 Mar;127(3):680-686(external link)

Lalle M, Camerini S, Cecchetti S, Blasetti Fantauzzi C, Crescenzi M, Pozio E.
Giardia duodenalis 14-3-3 protein is polyglycylated by a tubulin tyrosin ligase-like member and deglycylated by two metallocarboxypeptidases.
J Biol Chem. 2011 Feb 11;286(6):4471-4484(external link)

Lalle M, Currà C, Ciccarone F, Pace T, Cecchetti S, Fantozzi L, Ay B, Breton CB, Ponzi M.
Dematin, a component of the erythrocyte membrane skeleton, is internalized by the malaria parasite and associates with Plasmodium 14-3-3.
J Biol Chem. 2011 Jan 14;286(2):1227-1236(external link)

OA Gorleku, AM Barns, GR Prescott, J Greaves, LH Chamberlain.
Endoplasmic reticulum localization of DHHC palmitoyltransferases mediated by lysine-based sorting signals.
J Biol Chem. 2011 Nov 11;286(45):39573-84(external link)

J Greaves, JA Carmichael, LH Chamberlain.
The palmitoyl transferase DHHC2 targets a dynamic membrane cycling pathway: regulation by a C-terminal domain.
Mol Biol Cell. 2011 Jun 1;22(11):1887-95(external link)

R Peravali, J Gehrig, S Giselbrecht, D Lütjohann, Y Hadzhiev, F Müller, and U Liebel.
Automated feature detection and imaging for high-resolution screening of zebrafish embryos.
BioTechniques, Vol. 50, No. 5, May 2011, pp. 319–324(external link)

S Roizard, C Danelon, G Hassaïne, J Piguet, K Schulze, R Hovius, R Tampé, and H Vogel.
Activation of G-Protein-Coupled Receptors in Cell-Derived Plasma Membranes Supported on Porous Beads.
J Am Chem Soc. 2011 Oct 26;133(42):16868-74(external link)

E Smith, N Hégarat, C Vesely, I Roseboom, C Larch, H Streicher, K Straatman, H Flynn, M Skehel, T Hirota, R Kuriyama and H Hochegger.
Differential control of Eg5-dependent centrosome separation by Plk1 and Cdk1.
The EMBO Journal (2011) 30, 2233 - 2245, Published online 26 April, 2011(external link)
This paper nicely describes the use of Huygens Deconvolution for images acquired with a DeltaVision microscope

L Mensa, G Crespo, MJ Gastinger, J Kabat, S Pérez-del-Pulgar, R Miquel, SU Emerson, RH Purcell, X Forns.
Hepatitis C virus receptors claudin-1 and occludin after liver transplantation and influence on early viral kinetics.
Hepatology (2011) May;53(5):1436-1445(external link)

T Feinstein,V Wehbi, J Ardura, D Wheeler, S Ferrandon, T Gardella and J-P Vilardaga.
Retromer terminates the generation of cAMP by internalized PTH receptors.
Nature Chemical Biology 2011 March 27; (7):278-284(external link)

R Alonso, C Mazzeo, M C Rodriguez, M Marsh, A Fraile-Ramos, V Calvo, A Avila-Flores, I Merida and M Izquierdo.
Diacylglycerol kinase α regulates the formation and polarisation of mature multivesicular bodies involved in the secretion of Fas ligand-containing exosomes in T lymphocytes.
Cell Death and Differentiation 2011 Jan 21, advance online publication(external link)

Jeffrey Kamykowski, Peter Carlton, Siddharth Sehgal and Brian Storrie.
Quantitative immunofluorescence mapping reveals little functional
coclustering of proteins within platelet α-granules.
Blood 2011 118: 1370-1373.Prepublished online May 26, 2011(external link)

Lei Lu NTU Singapore, Mark S. Ladinski and Tomas Kirchhausen.
Formation of the postmitotic nuclear envelope from extended ER cisternae precedes nuclear
pore assembly.
JCB published August 8, 2011(external link)

Vladimir P. Baklaushev, Gaukhar M. Yusubalieva, Eugene B. Tsitrin, Olga I. Gurina, Nadezhda Ph. Grinenko2, Ilya V. Victorov2, and Vladimir P. Chekhonin.
Visualization of Connexin 43-positive cells of glioma and the periglioma zone by means of intravenously injected monoclonal antibodies.
Drug Delivery, 2011, 1–7, Early Online(external link)

Schlapp G, Scavone P, Zunino P and S Härtel.
Development of 3D Architecture of Uropathogenic Proteus mirabilis Batch Culture Biofilms - A Quantitative Confocal Microscopy Approach.
J Microbiol Methods, (2011, 87:2, 234-240 (Abstract(external link)

2010


Gonzalez D.R., Treuer A.V., Castellanos J., Dulce R.A., and Hare J.M.
Impaired S-Nitrosylation of the Ryanodine Receptor Caused by Xanthine Oxidase Activity Contributes to Calcium Leak in Heart Failure
Journal of Biological Chemistry September 10, 2010, vol 285, 28938-28945(external link)

Lalle M, Bavassano C, Fratini F, Cecchetti S, Boisguerin P, Crescenzi M, Pozio E.
Involvement of 14-3-3 protein post-translational modifications in Giardia duodenalis encystations.
Int J Parasitol. (2010), 40, 201-213(external link)

Lienkamp S, Ganner A, Boehlke C, Schmidt T, Arnold SJ, Schäfer T, Romaker D, Schuler J, Hoff S, Powelske C, Eifler A, Krönig C, Bullerkotte A, Nitschke R, Kuehn EW, Kim E, Burkhardt H, Brox T, Ronneberger O, Gloy J, Walz G.
Inversin relays Frizzled-8 signals to promote proximal pronephros development.
Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20388-93(external link)

Greaves J, Gorleku OA, Salaun C, Chamberlain LH.
Palmitoylation of the SNAP25 protein family: specificity and regulation by DHHC palmitoyl transferases.
J Biol Chem. 2010 Aug 6;285(32):24629-38(external link)

Jane E Leadsham and Campbell W Gourlay
cAMP/PKA signaling balances respiratory activity with mitochondria dependent apoptosis via transcriptional regulation
BMC Cell Biology 2010, 11:92(external link)

Q le Duc Q, Q Shi, I Blonk, A Sonnenberg, N Wang, D Leckband, J de Rooij.
Vinculin potentiates E-cadherin mechanosensing and is recruited to actin-anchored sites within adherens junctions in a myosin II-dependent manner.
J Cell Biol. 2010 Jun 28;189(7):1107-15.(external link)

Marvin Bentley, Deborah C. Nycz, Ashwini Joglekar, Ismene Fertschai, Roland Malli, Wolfgang F. Graier, and Jesse C. Hay
Vesicular Calcium Regulates Coat Retention, Fusogenicity, and Size of Pre-Golgi Intermediates
Mol. Biol. Cell 10.1091/mbc.E09-10-0914(external link)

Armin H. Seidl, Edwin W Rubel, and David M. Harris. Virginia Merrill Bloedel Hearing Research Center, Department of Otolaryngology–Head and Neck Surgery, University of Washington, Seattle, Washington.
J. Neurosci. 2010, Jan 6;30(1):70-80.(external link)

Ramirez O, García A, Rojas R, Couve A & S Härtel
Confined Displacement Algorithm Determines True and Random Colocalization in Fluorescence Microscopy.
Journal of Microscopy (Sep 1, 2010) 239:3, 173-83 (Abstract)(external link)

2009

Nina Jährling, Klaus Becker and hans-Ulrich Dodt. Published December 2009, 3D-reconstruction of blood vessels by
ultramicroscopy, Organogenesis 5:4, 227-230 https://www.landesbioscience.com/journals/organogenesis/06-JahrlingORG5-4.pdf(external link)

Zoltan Cseresnyes, Ulf Schwarz and Catherine M Green.
Analysis of replication factories in human cells by super-resolution light microscopy
BMC Cell Biology 2009 10: 88(external link)
Huygens Object Analyzer is used in this paper to segment and count objects

Fleissner A, Leeder AC, Roca MG, Read ND, Glass NL. Proc Natl Acad Sci U S A. 2009 Nov 2. (E-pub. ahead of print)
PMID: 19884508 (Pub Med - as supplied by publisher)
Oscillatory recruitment of signaling proteins to cell tips promotes coordinated behavior during cell fusion.
abstract(external link)

Gernot Stocker, Maria Fischer, Dietmar Rieder, Gabriela Bindea, Simon Kainz, Michael Oberstolz, James G McNally and Zlatko Trajanoski
iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis
BMC Bioinformatics 2009, 10:390(external link)

Christoph Hudemann, Maria Elisabet Lönn, José Rodrigo Godoy, Farnaz Zahedi Avval, Francisco Capani, Arne Holmgren, Christopher Horst Lillig
Identification, Expression Pattern, and Characterization of Mouse Glutaredoxin 2 Isoforms
Antioxidants & Redox Signaling. January 2009, 11(1): 1-14.
abstract(external link)
Link to cover publisher website(external link)

Jose A. Guerrero, Mark Kyei, Susan Russell, Junling Liu, T. Kent Gartner, Brian Storrie and Jerry Ware
Visualizing the von Willebrand factor/glycoprotein Ib-IX axis with a
platelet-type von Willebrand disease mutation
(Blood. Prepublished online Oct 6, 2009; doi:10.1182/blood-)

Seidl AH, Rubel EW.
A simple method for multiday imaging of slice cultures.
Microscopy Research and Technique. 2009 Jun 29.
abstract(external link)

Patricia A. Soucy, Lewis H. Romer
Endothelial cell adhesion, signaling, and morphogenesis in fibroblast-derived matrix
Matrix Biology Matrix Biology. 273–283. See line item 4 at abstract(external link)

Landeira D, Bart JM, Van Tyne D, Navarro M.
Cohesin regulates VSG monoallelic expression in trypanosomes.
J Cell Biol. 2009 Jul 27;186(2):243-54.
abstract(external link)

M.Oberlaender, P.J. Broser, B. Sakmann & S.Hippler
Shack-Hartmann wave front measurements in cortical tissue for deconvolution of large three-dimensional mosaic transmitted light BRIGHTFIELD micrographs.
Journal of Microscopy Vol. 233, Pt 2, 2009 pp 275-289 abstract(external link)

Lei Lu NTU Singapore, Mark S. Ladinsky and Tom Kirchhausen.
Cisternal Organization of the Endoplasmic Reticulum during Mitosis.
Molecular Biology of the Cell, Vol. 20, 3471–3480, August 1, 2009.(external link)

Fidorra M, Garcia A, Ipsen J, Härtel S & L Bagatolli.
Lipid domains in giant unilamellar vesicles and their correspondence with equilibrium thermodynamic phases: A quantitative fluorescence microscopy imaging approach.
Biochimica et Biophysica Acta (BBA) - Biomembranes, 1788(10):2142-2149 (2009).(external link)

2008

Albanese A, Arosio D, Terreni M, Cereseto A (2008) HIV-1 Pre-Integration Complexes Selectively Target Decondensed Chromatin in the Nuclear Periphery. PLoS ONE 3(6): e2413. doi:10.1371/journal.pone.0002413

Swift F, Birkeland JA, Tovsrud N, Enger UH, Aronsen JM, Louch WE, Sjaastad I, Sejersted OM.
Altered Na+/Ca2+-exchanger activity due to downregulation of Na+/K+-ATPase alpha2-isoform in heart failure.
Cardiovasc Res. 2008 Apr 1;78(1):71-8. Epub 2008 Jan 17. Erratum in: Cardiovasc Res. 2008 Jul 15;79(2):352.

Eiko K. de Jong, Jonathan Vinet, Vesna S. Stanulovic, Michel Meijer, Evelyn Wesseling, Klaas Sjollema, Hendrikus W. G. M. Boddekeand Knut Biber
Expression, transport, and axonal sorting of neuronal CCL21 in large dense-core vesicles.
The FASEB Journal. 2008;22:(external link)

Nagotu S, Krikken AM, Otzen M, Kiel JA, Veenhuis M, van der Klei IJ
Peroxisome fission in Hansenula polymorpha requires Mdv1 and Fis1, two proteins also involved in mitochondrial fission.
Traffic Sept 2008, (9):(external link)

Y. Belyaev, A. Seitz, S. Terjung, R. Pepperkok
Deconvolution allows reliable imaging of living cells at low fluorescence level.
Poster presented at the ELMI 2008 meeting.
get PDF(external link)

Sabrina Sonda,* Sasa Stefanic, and Adrian B. Hehl
A Sphingolipid Inhibitor Induces a Cytokinesis Arrest and Blocks Stage Differentiation in Giardia lamblia{triangledown}
Antimicrobial Agents and Chemotherapy, February 2008, p. 563-569, Vol. 52, No. 2 on-line(external link)

Sylvain Hugel, Mathias Abegg, Vincenzo de Paola, Pico Caroni, Beat H. Gähwiler and R. Anne McKinney
Dendritic Spine Morphology Determines Membrane-Associated Protein Exchange between Dendritic Shafts and Spine Heads
Cerebral Cortex, doi:10.1093/cercor/bhn118
on-line(external link)

S. Kumar, G. Ho, K. M. Woo, and L. Zhuo
Achieving cellular resolution for in vivo retinal images of transgenic GFAP-GFP mice via image processing
Optics Express, Vol. 16, Issue 11, pp.
on-line(external link)

Alberto Sanchez-Diaz, Vanessa Marchesi, Stephen Murray, Richard Jones, Gislene Pereira1, Ricky Edmondson, Terry Allen & Karim Labib.
Inn1 couples contraction of the actomyosin ring to membrane ingression during cytokinesis in budding yeast.
Nature Cell Biology 10, 395 - )
Published online: 16 March 2008|doi:10.1038/ncb1701

Wüstner, D. 2008. Free-cholesterol loading does not trigger phase separation of the fluorescent sterol dehydroergosterol in the plasma membrane of macrophages. Chem. Phys. Lipids. 154, 129-136.

Wüstner, D. and Færgeman, N.J. 2008 Chromatic aberration correction and deconvolution for UV sensitive imaging of fluorescent sterols in cytoplasmic lipid droplets. Cytometry A. 73, 727-744.

Wüstner, D., and Færgeman, N.J. 2008. Spatiotemporal analysis of endocytosis and membrane distribution of fluorescent sterols in living cells. Histochem. Cell Biol. 130 , 891-908.

Mice Lacking Histone Deacetylase 6 Have Hyperacetylated Tubulin but Are Viable and Develop Normally
Yu Zhang, SoHee Kwon, Teppei Yamaguchi, et al.
Molecular and Cellular Biology, March 2008, p. , Vol. 28, No. 5 on-line(external link)


2007

D. Wüstner
Plasma Membrane Sterol Distribution Resembles the Surface Topography of Living
MBC Vol. 18, Issue 1, 211-228, January 2007 get pdf(external link)

Gendron ME, Thorin-Trescases N, Villeneuve L, Thorin E.
Aging associated with mild dyslipidemia reveals that COX-2 preserves dilation despite endothelial dysfunction.
Am J Physiol Heart Circ Physiol. 2007 Jan;292(1):H451-8.
Epub 2006 Sep 15.(external link)

Landeira D, Navarro M.
Nuclear repositioning of the VSG promoter during developmental silencing in Trypanosoma brucei.
J Cell Biol. 2007 Jan 15;176(2):133-9.(external link)

Tony Shmygol, K. Noble and Susan Wray.
Depletion of membrane cholesterol eliminates the Ca2+-activated component of outward potassium current and decreases membrane capacitance in rat uterine myocytes.
The Journal of Physiology March 2007(external link)

Swift F, Tovsrud N, Enger UH, Sjaastad I, Sejersted OM.
The Na+/K+-ATPase alpha2-isoform regulates cardiac contractility in rat cardiomyocytes.
Cardiovasc Res. 2007 Jul 1;75(1):109-17. Epub 2007 Mar 24.

Navarro M, Peñate X, Landeira D.
Nuclear architecture underlying gene expression in Trypanosoma brucei.
Trends Microbiol. 2007 Jun;15(6):263-70. Review.(external link)

Varma A, de Pedro MA, Young KD.FtsZ directs a second mode of peptidoglycan
synthesis in Escherichia coli. J Bacteriol. 2007 Aug;189(15):. Epub 2007
May 18.

Dupré DJ, Robitaille M, Richer M, Ethier N, Mamarbachi AM, Hébert TE.
Dopamine receptor-interacting protein 78 acts as a molecular chaperone for Ggamma
subunits before assembly with Gbeta
J Biol Chem. 2007 May 4;282(18):.
Epub 2007 Mar 15.(external link)

Sandra Goetze, Julio Mateos-Langerak, Hinco J. Gierman, Wim de Leeuw, Osdilly Giromus, Mireille H. G. Indemans, Jan Koster, Vladan Ondrej, Rogier Versteeg, and Roel van Driel
The Three-Dimensional Structure of Human Interphase Chromosomes Is Related to the Transcriptome Map. Molecular and Cellular Biology, June 2007, p. , Vol. 27, No. 12(external link)
PDF(external link)

Siddhart Sehgal, Brian Storrie
Evidence that differential packaging of the major platelet granule proteins von Willebrand factor and fibrinogeen can support their differential release. Journal of Thrombosis and Haemostasis July 2007.

Engstler,M., Pfohl,T., Herminghaus,S., Boshart,M., Wiegertjes,G., Heddergott,N., and Overath,P. (2007).
Hydrodynamic flow-mediated protein sorting on the cell surface of trypanosomes.
Cell , 505-515(external link)

El-Helou V, Proulx C, Gosselin H, Clement R, Mimee A, Villeneuve L, Calderone A.
Dexamethasone treatment of post-MI rats attenuates sympathetic innervation of the infarct region.
J Appl Physiol. 2007 Oct 4;

K. Jolling, M. Vandeven, J. v.d. Eynden, M. Ameloot, E. v. Kerkhove
A highly reliable and budget-friendly Peltier-cooled camera for biological fluorescence imaging microscopy
Journal of Microscopy 228 (3), 264271.
doi:10.1111/j..2007.01858.x(external link)

A. Shavinskaya, S. Boulant, F. Penin, J. McLauchlan, and R. Bartenschlager
The lipid droplet binding domain of hepatitis C virus core protein is a major determinant for efficient virus assembly
J. Biol. Chem, 10.1074/get pdf(external link)

G.c. White II and R. Rompietti
Platelet secretion: indiscriminately spewed forth or highly iorchestrated?
Journal of Thrombosis and Haemostasis 5:

A. Varma, M. de Pedro, K. D. Young
FtsZ directs a second mode of peptidoglycan synthesis in Escherichia coli
J. Bacteriol. doi:10.1128/JB.(external link)

Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jaerling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgaensberger, Klaus Becker.
Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Nature Methods 4(external link)

Fleissner A, Glass NL. Department of Plant and Microbial Biology, UniCal
SO, a protein involved in hyphal fusion in Neurospora crassa, localizes to septal plugs.
http://www.ncbi.nlm.nih.gov/pubmed/17099082?dopt=Citation(external link)

Mariette P.C.van de Corput, Tobias A.Knoch, Gert W.van Cappellen, Ernie de Boer, Frank G. Grosveld. (Erasmus MC Cell Biology & Genetics)
High resolution confocal microscopy and nano-scale distance measurements show difference in 3D confirmation between active and inactive mouse B-major Globin Loci?
get pdf(external link)


2006

Staci A. Sorensen and Edwin W. Rubel
The Level and Integrity of Synaptic Input Regulates Dendrite Structure.
J. Neuroscience, February 1, 2006; 26(5):1539 –1550
abstract(external link)

Michael Eisenstein.
Technology feature Microscopy: Something to see. Light microscopy is undergoing a renaissance, with a huge range of tools and techniques for gathering biological data with unprecedented speed and resolution.
NATURE. Vol. 443,26 October 2006.

Lalle M, Salzano AM, Crescenzi M, Pozio E.
The Giardia duodenalis 14-3-3 protein is post-translationally modified by phosphorylation and polyglycylation of the C-terminal tail.
J. Bio. Chem (2006) 281; 5137-5148 paper(external link)

Dupré DJ, Robitaille M, Ethier N, Villeneuve LR, Mamarbachi AM, Hébert TE.
Seven transmembrane receptor core signaling complexes are assembled prior to plasma membrane trafficking.
J. Biol. Chem. 2006 Nov 10;281(45):
Epub 2006 Sep 7.(external link)

B. E. Jády, P. Richard, E. Bertrand, and T. Kiss
Cell Cycle-dependent Recruitment of Telomerase RNA and Cajal Bodies to Human Telomeres.
Mol. Biol. Cell Vol. 17, Issue 2, 944-954, February 2006 abstract(external link)

A. Onoa, A. A. Waheeda and E. O. Freeda
Depletion of cellular cholesterol inhibits membrane binding and higher-order multimerization of human immunodeficiency virus type 1 Gag
doi:10.1016/j.virol.2006.10.011(external link)

Miguel Vicente, Ana Isabel Rico, Rocío Martínez-Arteaga, and Jesús Mingorance
Septum Enlightenment: Assembly of Bacterial Division Proteins
Journal of Bacteriology, January 2006, p. 19-27, Vol. 188, No. 1(external link)
Cover(external link)

Ilaria Dal Pra, Anna Chiarini, Alessandro Boschi, Guiliano Freddi and Ubaldo Armato.
Novel dermo-epidermal equivalents on silk fibroin- based formic acid-crosslinked three-dimensional nonwoven devices with prospective applications in human tissue engineering/regeneration/repair.
International Journal of Molecular medicine 18, 241-247, 2006.
get pdf(external link)

Rodriguez AJ, et al.
Visualization of mRNA translation in living cells, 2006 October 9
J Cell Biol 175(1):67-76(external link)

Ch. Le Clainche, D. Schlaepfer, A. Ferrari1, M. Klingauf, K. Grohmanova1, A. Veligodskiy, D. Didry, D. Le, C. Egile, M.-F. Carlier, R. Kroschewski
IQGAP1 stimulates actin assembly through the N-WASP-ARP2/3 pathway.
J. Biol. Chem, 10.1074/
get pdf(external link).

Yacoub D, Theoret JF, Villeneuve L, Abou-Saleh H, Mourad W, Allen BG, Merhi Y.
Essential role of PKCdelta in platelet signaling, alpha IIbbeta 3 activation, and thromboxane A2release1.
J Biol Chem. 2006 Aug 8; Epub ahead of print
PMID: PubMed. as supplied by publisher(external link)

Karunananda Bombuwala, Thomas Kinstle, Vladimir Popik, Sonal O Uppa, James B Olesen, Jose Viña, Carol A Heckman.
Colchitaxel, a coupled compound made from microtubule inhibitors colchicine and paclitaxel.
Beilstein Journal of Organic Chemistry 2006, 2:13(external link). doi:10.1186/

David M, Richer M, Mamarbachi AM, Villeneuve LR, Dupre DJ, Hebert TE.
Interactions between GABA-B(1) receptors and Kir 3 inwardly rectifying potassium channels.
Cell Signal. 2006 May 23;
Epub ahead of print(external link)

Zhang Y, Xiao J, Wang H, Luo X, Wang J, Villeneuve LR, Zhang H, Bai Y, Yang B, Wang Z.
Restoring depressed HERG K+ channel function as a mechanism for insulin treatment of abnormal QT prolongation and associated arrhythmias in diabetic rabbits.
Am J Physiol Heart Circ Physiol. 2006 Sep;291(3):H1446-H1455. Epub 2006 Apr 14.
PMID: PubMed. as supplied by publisher(external link)

Boivin B, Lavoie C, Vaniotis G, Baragli A, Villeneuve LR, Ethier N, Trieu P, Allen BG, Hebert TE.
Functional beta-adrenergic receptor signalling on nuclear membranes in adult rat and mouse ventricular cardiomyocytes.
Cardiovasc Res. 2006 Jul 1;71(1):69-78. Epub 2006 Mar 24.
PMID: PubMed.in process(external link)

Seiichiro Nagai, Tadashi Mabuchi, Shuri Hirata, Tomoko Shoda,Tsuyoshi Kasai, Sadaki Yokota, Hiroshi Shitara, Hiromichi Yonekawa, Kazuhiko Hoshi.
Correlation of abnormnal mitochondial distribution in mouse oocytes with reduces developmental competence.
Tohuku J. Exp.Med., 2006, 210, 137-144

Kuravi K,Nagotu S,Krikken AM,Sjollema K,Deckers M,Erdmann R,Veenhuis M,van der Klei IJ.
Dynamin-related proteins Vps1p and Dnm1p control peroxisome abundance in Saccharomyces cerevisiae.
J Cell Sci. 2006 Oct 1;119(Pt 19):. Epub 2006 Sep 12.
PubMed. as supplied by publisher(external link)

Ann Icking, Monia Amaddii, Mika Ruonala, Stefan Höning, Ritva Tikkanen
Polarized transport of Alzheimer Amyloid Precursor Protein is mediated by adaptor complex AP-1B
get pdf(external link)


2005

Ilaria Dal Pra, Anna Chiarini, Edward F. Nemeth, Ubaldo Armato.
Roles of Ca(2+)and the Ca(2+)- Sensing Receptor (CARS) in the Expression of Inducible NOS ( Nitric Oxide Synthase)-2 and Its BH4 (Tetrahydrobiopterin)-Dependent Activation in Cytokine-Stimulated Adult Human Astrocytes.
Journal of Cellular Biochemistry 96

Anna Chianini, Ilaria Dalpra, Lia menapace, Raffaella Pacchiana, James F. Whitfield and Ubaldo Armato.
Solube amyloid beta-peptide and myelin basic protein strongly stimulate, alone and in synergism with combined pro-inflammatory cytokines, the expression of functional nitric oxide synthase-2 in normal adult human astrocytes.
International Journal of Molecular Medicine , 2005(external link)

Geiser M, Rothen-Rutishauser B, Kapp N, Schürch S, Kreyling W, Schulz H, Semmler M, Im Hof V, Heyder J, Gehr P.
Ultrafine particles cross cellular membranes by non-phagocytic mechanisms in lungs and in cultured cells.
Environ Health Perspect (2005) 113

Wuestner D.
Improved visualization and quantitative analysis of fluorescent membrane sterol in polarized hepatic cells
Journal of Microscopy, Vol. 220, Pt 1 October 2005, pp. 47-64

Boivin B, Villeneuve LR, Farhat N, Chevalier D, Allen BG
Sub-cellular distribution of endothelin signaling pathway components in ventricular myocytes and heart: lack of preformed caveolar signalosomes
J Mol Cell Cardiol. (2005 Apr) 38(4):665-76.

Sung Wu Rhee, Tregei Starr, Kimberly Forsten-Williams and Brian Storrie
The Steady-State Distribution of Glycosyltransferases Between the Golgi Apparatus and the Endoplasmic Reticulum is Approximately 90:10
Traffic 6:11, 978–990, November 2005(external link)
This paper nicely shows that quantification of widefield data was more trustworthy after deconvolution.


2004

A. A. Aravin, M. S. Klenov, V. V. Vagin, F. Bantignies, G. Cavalli, and V. A. Gvozdev
Dissection of a Natural RNA Silencing Process in the Drosophila melanogaster Germ Line
Mol Cell Biol. 2004 August; 24(15): 6742-6750.
get pdf(external link)

R. R. Duncan, A. Bergmann, M. A. Cousin, D. K. Apps & M. J. Shipston
Multi-dimensional time-correlated single photon counting (TCSPC) fluorescence lifetime imaging microscopy (FLIM) to detect FRET in cells
Journal of Microscopy, Vol. 215, Pt 1 July 2004, pp. 1-12
get pdf(external link)

Shav-Tal Y, Shenoy SM, Singer RH.
Imaging of Single mRNAs in the Cytoplasm of Living Cells, Live Cell Imaging: A Laboratory Manual
Goldman RD and Spector DL, 603-615. Cold Spring Harbor Laboratory (2004 October)

Migneault A, Sauvageau S, Villeneuve L, Thorin E, Fournier A, Leblanc N, Dupuis J.
Chronically elevated endothelin levels reduce pulmonary vascular reactivity to nitric oxide.
Am J Respir Crit Care Med. 2005 Mar 1;171(5):506-13. Epub 2004 Dec 3.

Yaron Shav-Tal ( [http://singerlab.org/people/ys.htm] ), Xavier Darzacq, Shailesh M Shenoy, Dahlene Fusco, Susan M Janicki, David L Spector, Robert H Singer
Dynamics of Single mRNPs in Nuclei of Living Cells
Science (2004 June ) pp

Aten JA, Stap J, Krawczyk PM, van Oven CH, Hoebe RA, Essers J and Kanaar R
Dynamics of DNA Double-Strand Breaks Revealed by Clustering of Damaged Chromosome Domains
Science (2004) Vol ) pp 92-95

Baunaure F, Eldin P, Cathiard A-M and Vial H
Characterization of a non-mitochondrial type I phosphatidylserine decarboxylase in Plasmodium falciparum
Molecular Microbiology (2004) 51 (1); pp 33-46

Callahan R, Labunskiy DA, Logvinova A, Abdallah M, Liu C, Cotten JF and Yosta CS
Immunolocalization of TASK-3 (KCNK9) to a subset of cortical neurons in the rat CNS
Biochemical and Biophysical Research Communications (2004) 319 pp 525-530

Constans A
Rendering images in 3-D, New software tools provide functional beauty from 2-D slices
The Scientist (2004) 18;8 pp 40-42

Das V, Nal B, Dujeancourt A, Thoulouze MI, Galli T, Roux P, Dautry-Varsat A and Alcover A
Activation-Induced Polarized Recycling Targets T Cell Antigen Receptors to the Immunological Synapse; Involvement of SNARE Complexes
Immunity (2004) 20(5) pp 577-588

Ehrlich JR, Pourrier M, Weerapura M, Ethier N, Marmabachi M, Hébert TE and Nattel S
KvLQT1 modulates the distribution and biophysical properties of HERG: A novel alpha-subunit interaction between delayed-rectifier currents
J. Biol. Chem. (2004) Vol. 279 (2) pp

Engstler M, Thilo L, Weise F, Grünfelder CG, Schwarz H, Boshart M and Overath P
Kinetics of endocytosis and recycling of the GPIanchored variant surface glycoprotein in Trypanosoma brucei
Journal of Cell Science (2004) 117; pp

Fischer H, Schwarzer C and Illek B
Vitamin C controls the cystic fibrosis transmembrane conductance regulator chloride channel
Proc Natl Acad Sci (2004) vol 101 no 10; pp

Frieden M, James D, Castelbou C, Danckaert A, Martinou JC and Demaurex N
Ca2+ Homeostasis during Mitochondrial Fragmentation and Perinuclear Clustering Induced by hFis1
J Biol Chem. (2004) 21;279(21) pp

Goud AP, Goud PT, Van Oostveldt P, Diamond MP and Dhont M
Dynamic changes in microtubular cytoskeleton of human postmature oocytes revert after ooplasm transfer
Fertil Steril. (2004) 81 (2) pp 323-331

Grailhe R, de Carvalho LP, Paas Y, Le Poupon C, Soudant M, Bregestovski P, Changeux JP and Corringer, PJ.
Distinct subcellular targeting of fluorescent nicotinic alpha3beta4 and serotoninergic 5-HT3A receptors in hippocampal neurons
Eur J Neurosci. (2004) 19(4) pp 855-862

Höfken T and Schiebel E
Novel regulation of mitotic exit by the Cdc42 effectors Gic1 and Gic2
The Journal of Cell Biology (2004) Volume 164 (2) pp 219-231

Martinez-Campos M, Basto R, Baker J, Kernan M and Raff JW
The Drosophila pericentrin-like protein is essential for cilia/flagella function, but appears to be dispensable for mitosis
The Journal of Cell Biology, Volume 165(5) pp 673-683

Planat-Bénard V, Menard C, André M, Puceat M, Perez A, Garcia-Verdugo J-M, Pénicaud L and Casteilla, L.
Spontaneous Cardiomyocyte Differentiation From Adipose Tissue Stroma Cells
Circ Res. (2004) 94(2) pp 223-229

Richards DA, de Paola V, Caroni P, Gähwiler BH and McKinney RA
AMPA-receptor activation regulates the diffusion of a membrane marker in parallel with dendritic spine motility in the mouse hippocampus
The Journal of Physiology (2004); In Press: 10.1113/jphysiol.2004.

Roux P, Münter S, Frischknecht F, Herbomel P and Shorte SL
Focusing light on infection in four dimensions
Cellular Microbiology (2004) 6 (4), pp 333-343

Sedarat F, Lin E, Moore E and Tibbits G
Deconvolution of confocal images of dihydropyridine and ryanodine receptors in developing cardiomyocytes
Journal of Appl Physiol (2004) 97, pp

Schutte B, Henfling M, Kölgen W, Bouman M, Meex S, Leers MPG, Nap M, Björklund V, Björklund P, Björklund B, Lane EB, Omary MB, Jörnvall H and Ramaekers FCS
Keratin 8/18 breakdown and reorganization during apoptosis
Experimental Cell Research (2004) 297(1), pp 11-26

Shin JH, Gardel ML, Mahadevan L, Matsudaira P and Weitz DA
Relating microstructure to rheology of a bundled and cross-linked F-actin network in vitro
Proc Natl Acad Sci U S A. (2004) june 21 (Epub ahead of print)

Smets I, Caplanusi A, Despa S, Molnar Z, vandeVen M, Ameloot M and Steels P
Ca2+ uptake in mitochondria occurs via the reverse action of the Na+/Ca2+ exchanger in metabolically inhibited MDCK cells
Am J Physiol Renal Physiol (2004) 286: F784-794

Tschachler E, Reinisch CM, Mayer C, Paiha K, Lassmann H and Weninger W
Sheet Preparations Expose the Dermal Nerve Plexus of Human Skin and Render the Dermal Nerve End Organ Accessible to Extensive Analysis
J Invest Dermatol (2004) 122 (1); pp 177-182

Wouterlood FG, van Haeften T, Eijkhoudt M, Baks-te-Bulte L, Goede PH and Witter MP
Input from the presubiculum to dendrites of layer-V neurons of the medial entorhinal cortex of the rat
Brain Research (1), pp 1-12

Zaccheo O, Dinsdale D, Meacock PA and Glynn P
Neuropathy Target Esterase and Its Yeast Homologue Degrade Phosphatidylcholine to Glycerophosphocholine in Living Cells
The Journal Of Biological Chemistry (2004) Vol. 279, No. 23, pp.

Berggren, P-O et al.,
Removal of Ca2+ Channel beta3 Subunit Enhances Ca2+ Oscillation Frequency and Insulin Exocytosis. Cell (2004) Vol. 119, 273–284


2003

Ausma J, van der Velden HMW, Lenders M-H, van Ankeren EP, Jongsma HJ, Ramaekers FCS, Borgers M and Allessie MA
Reverse Structural and Gap-Junctional Remodeling After Prolonged Atrial Fibrillation in the Goat
Circulation (2003) 107; pp

Bailly E, Cabantous S, Sondaz D, Bernadac A, Simon MN.
Differential cellular localization among mitotic cyclins from Saccharomyces cerevisiae: a new role for the axial budding protein Bud3 in targeting Clb2 to the mother-bud neck
J Cell Sci. (2003) ;116(Pt 20) pp

Balthasar N, Mery P-F, Magoulas CB, Mathers KE, Martin A, Mollard P and Robinson ICAF
Growth Hormone-Releasing Hormone (GHRH) Neurons in GHRH-Enhanced Green Fluorescent Protein Transgenic Mice: A Ventral Hypothalamic Network
Endocrinology (2003) 144(6) pp

Bantignies F, Grimaud C, Lavrov S, Gabut M, Cavalli G.
Inheritance of Polycomb-dependent chromosomal interactions in Drosophila
Genes & Development (2003) ;17; pp

Boivin B, Chevalier D, Villeneuve LR, Rousseau E and Allen BG
Functional endothelin receptors are present on nuclei in cardiac Ventricular myocytes
J.Biol.Chem. (2003) Vol 278, No. 31 pp

Bürgi S, Baltensperger K and Honegger UE
Antidepressant-induced switch of b1-adrenoceptor trafficking as a mechanism for drug action
J.Biol.Chem. (2003) 278 pp

Daly CJ and McGrath JC
Fluorescent ligands, antibodies, and proteins for the study of receptors
Pharmacology & Therapeutics (2003) Vol 100 (2) pp 101-118

Demaurex N and Frieden M
Measurements of the free luminal ER Ca2+ concentration with targeted cameleon fluorescent proteins
Cell Calcium (2003) 34(2) pp 109-119

De Simoni A, Griesinger CB and Edwards FA
Development of rat CA1 neurones in acute vs organotypic slices: role of experience in synaptic morphology and activity
J Physiol. (2003) 550(Pt 1) pp 135-147

Duncan RR, Greaves J, Wiegand UK, Matskevich I, Bodammer G, Apps DK, Shipston MJ and Chow RM
Functional and spatial segregation of secretory vesicle pools according to vesicle age.
Nature pp 176-180

Evans JG, Correia I, Krasavina O, Watson N and Matsudaira P
Macrophage podosomes assemble at the leading lamella by growth and fragmentation
The Journal of Cell Biology (2003) Volume 161, Number 4, pp 697-705

Fusco D, Accornero N, Lavoie B, Shenoy SM, Blanchard J-M, Singer RH and Bertrand E
Single mRNA Molecules Demonstrate Probabilistic Movement in Living Mammalian Cells
Current Biology (2003) Vol 13, pp 161-167

Galvan V, Logvinova A, Sperandio S, Ichijo H and Bredesen DE
Type 1 Insulin-like Growth Factor Receptor (IGF-IR) Signaling Inhibits Apoptosis Signal-regulating Kinase 1 (ASK1)
J.Biol.Chem. (2003) Vol. 278, No. 15, pp 13325-13332

Gerzanich V, Ivanov A, Ivanova S, Yang JB, Zhou H, Dong Y and Simard JM
Alternative Splicing of cGMP-Dependent Protein Kinase I in Angiotensin-Hypertension Novel Mechanism for Nitrate Tolerance in Vascular Smooth Muscle
Circ Res. (2003) 93, pp 805-812

Gerzanich V, Ivanova S, van der Heiden M, Zhou H and Simard JM
Trans-Cellular Proliferating Cell Nuclear Antigen Gene Activation in Cerebral Vascular Smooth Muscle by Endothelial Oxidative Injury In Vivo
Arterioscler Thromb Vasc Biol. (2003) 23, pp

Gimona M, Kaverina I, Resch GP, Vignal E and Burgstaller G
Calponin Repeats Regulate Actin Filament Stability and Formation of Podosomes in Smooth Muscle Cells
Molecular Biology of the Cell (2003) Vol 14, pp

Goshima G and Vale RD
The roles of microtubule-based motor proteins in mitosis: comprehensive RNAi analysis in the Drosophila S2 cell line
The Journal of Cell Biology (2003) Volume 162, Number 6 pp

Grünfelder CG, Engstler M, Weise F, Schwarz H, Stierhof Y-D, Morgan GW, Field MC and Overath P
Endocytosis of a Glycosylphosphatidylinositol-anchored Protein via Clathrin-coated Vesicles, Sorting by Default in Endosomes, and Exocytosis via RAB11-positive Carriers
Molecular Biology of the Cell (2003) Vol. 14, pp 2029-2040

Hauf S, Cole RW, LaTerra S, Zimmer C, Schnapp G, Walter R, Heckel A, van Meel J, Rieder CL, and Peters J-M
The small molecule Hesperadin reveals a role for Aurora B in correcting kinetochore microtubule attachment and in maintaining the spindle assembly checkpoint
The Journal of Cell Biology (2003), Vol 161( 2), pp 281-294

Heilbronn R, Engstler M, Weger S, Krahn A, Schetter C and Boshart M
ssDNA-dependent colocalization of adeno-associated virus Rep and herpes simplex virus ICP8 in nuclear replication domains
Nucleic Acids Research (2003); Vol. 31, No. 21, pp

Homma N, Takei Y, Tanaka Y, Nakata T, Terada S, Kikkawa M, Noda Y and Hirokawa N
Kinesin Superfamily Protein 2A (KIF2A) Functions in Suppression of Collateral Branch Extension
Cell (2003) Vol 114, Issue 2, pp 229-239

Houzet L, Battini JL, Bernard E, Thibert V, Mougel M.
A new retroelement constituted by a natural alternatively spliced RNA of murine replication-competent retroviruses
EMBO J. (2003) 15;22(18) pp

Jaz´win´ska A, Ribeiro C and Affolter M
Epithelial tube morphogenesis during Drosophila tracheal development requires Piopio, a luminal ZP protein
Nature Cell Biology (2003) 5(10) pp 895-901

Klauke N, Smith GL and Cooper J
Stimulation of Single Isolated Adult Ventricular Myocytes within a Low Volume Using a Planar Microelectrode Array
Biophysical Journal (2003) Vol.85 pp

Lakemond CMM, de Jongh HHJ, Paques M, van Vliet T, Gruppen H, Alphons and Voragen GJ
Gelation of soy glycinin; influence of pH and ionic strength on network structure in relation to protein conformation
Food Hydrocolloids (2003) Vol 17(3) pp 365-377

Lalevee N, Resin V, Arnaudeau S, Demaurex N, Rossier MF
Intracellular Transport of Calcium from Plasma Membrane to Mitochondria in Adrenal H295R Cells: Implication for Steroidogenesis
Endocrinology (2003) ;144(10), pp

Lorger M, Engstler M, Homann M and Göringer HU
Targeting the Variable Surface of African Trypanosomes with Variant Surface Glycoprotein-Specific, Serum-Stable RNA Aptamers
Eukarotic Cell (2003) pp 84-94

Martin-Verdeaux S, Pombo I, Iannascoli B, Roa M, Varin-Blank N, Rivera J and Blank U
Evidence of a role for Munc18-2 and microtubules inmast cell granule exocytosis
Journal of Cell Science (2003) 116, pp 325-334

Malli R, Frieden F, Osibow K, Zoratti C, Mayer M, Demaurex N and Graier WF
Sustained Ca2+ Transfer across Mitochondria Is Essential for Mitochondrial Ca2+ Buffering, Store-operated Ca2+ Entry, and Ca2+ Store Refilling
J. Biol. Chem. (2003) 278: pp

Metzen E, Berchner-Pfannschmidt U, Stengel P, Marxsen JH, Stolze I, Klinger M, Huang WQ, Wotzlaw C, Hellwig-Bürgel T, Jelkmann W, Acker H and Fandrey J
Intracellular localisation of human HIF-1a hydroxylases: implications for oxygen sensing
Journal of Cell Science (2003) 116, pp

Mußmann R, Janssen H, Calafat J, Engstler M, Ansorge I, Clayton C and Borst P
The expression level determines the surface distribution of the transferrin receptor in Trypanosoma brucei
Molecular Microbiology (2003) 47(1) pp 23-35

Nair P, Schaub BE and Rohrer J
Characterization of the Endosomal Sorting Signal of the Cation-Dependent Mannose 6-Phosphate Receptor
J.Biol.Chem. (2003) Vol 278, No. 27 pp

Oleynikov Y and Singer RH
Real-Time Visualization of ZBP1 Association with beta-actin mRNA during Transcription and Localization
Current Biology (2003) Vol. 13 pp 199-207

Perez-Terzic C, Behfar A, Mery A, van Deursen JMA, Terzic A, Pucéat M
Structural Adaptation of the Nuclear Pore Complex in Stem Cell-Derived Cardiomyocytes
Circ Res (2003) 92 pp 444-452

Planat-Bénard V, Menard C, André M, Pucéat M, Perez A, Garcia-Verdugo J-M, Pénicaud L and Casteilla L
Spontaneous Cardiomyocyte Differentiation From Adipose Tissue Stroma Cells
Circ. Res. (2003); 10.1161/01.RES..43271.47

Pucéat M, Travo P, Quinn MT and Fort P
A Dual Role of the GTPase Rac in Cardiac Differentiation of Stem Cells
Molecular Biology of the Cell (2003) Vol. 14, pp

Regnard C, Fesquet D, Janke C, Boucher D, Desbruyeres E, Koulakoff A, Insina C, Travo P, Edde B
Characterisation of PGs1, a subunit of a protein complex co-purifying with tubulin polyglutamylase
J Cell Sci. (2003);116(Pt 20), pp

Rogers SL, Wiedemann U, Stuurman N and Vale RD
Molecular requirements for actin-based lamella formation in Drosophila S2 cells
The Journal of Cell Biology (2003) Volume 162, Number 6 pp

Stepanova T, Slemmer J, Hoogenraad CC, Lansbergen G, Dortland B, De Zeeuw CI, Grosveld F, van Cappellen G, Akhmanova A and Galjart N
Visualization of Microtubule Growth in Cultured Neurons via the Use of EB3-GFP (End-Binding Protein 3-Green Fluorescent Protein)
The Journal of Neuroscience (2003) 23(7) pp

Thorn H, Stenkula KG, Karlsson M, Örtegren U, Nystrom FH, Gustavsson J and Strålfors P
Cell surface orifices of caveolae and localization of caveolin to the necks of caveolae in adipocytes
Mol. Biol. Cell (2003) 14 pp

Verschure PJ, van der Kraan I, Manders EMM, Hoogstraten D, Houtsmuller AB and van Driel R
Condensed chromatin domains in the mammalian nucleus are accessible to large macromolecules
EMBO reports (2003) 4, pp 861-866

Voet T, Liebe B, Labaere C, Marynen P and Scherthan H
Telomere-independent homologue pairing and checkpoint escape of accessory ring chromosomes in male mouse meiosis
The Journal of Cell Biology (2003) Vol. 162, Number 5, pp 795-807

Wouterlood FG , Böckers T and Witter MP
Synaptic contacts between identified neurons visualized in the confocal laserscanning microscope. Neuroanatomical tracing combined with immunofluorescence detection of postsynaptic density proteins and target neuron-markers
J. Neuroscience Methods (2003) 128 pp 129-142


2002

Arnaudeau S, Frieden M, Nakamura K, Castelbou C, Michalak M and Demaurex N
Calreticulin differentially modulates calcium uptake and release in the endoplasmic reticulum and mitochondria
J. Biol.Chem. (2002) 277 pp

Behfar A, Zingman LV, Hodgson DM, Rauzier J-M, Kane GC, Terzic A and Pucéat M
Stem cell differentiation requires a paracrine pathway in the heart
The FASEB Journal (2002) 16 pp

Brockhaus J and Deitmer JW
Long-lasting modulation of synaptic input to Purkinje neurons by Bergmann glia stimulation in rat brain slices
Journal of Physiology (2002) 545.2 pp 581-593

Charrasse S, Meriane M, Comunale F, Blangy A and Gauthier-Rouvière C
N-cadherin-dependent cell-cell contact regulates Rho GTPases and ß-catenin localization in mouse C2C12 myoblasts
The Journal of Cell Biology (2002) Volume 158, Number 5, pp 953-965

Claycomb JM, MacAlpine DM, Evans JG, Bell SP and Orr-Weaver TL
Visualization of replication initiation and elongation in Drosophila
The Journal of Cell Biology (2002), Volume 159, Number 2, pp 225-236

Conte N, Charafe-Jauffret E, Delaval B, Adélaïde J, Ginestier C, Geneix J, Isnardon D, Jacquemier J and Birnbaum D
Carcinogenesis and translational controls: TACC1 is down-regulated in human cancers and associates with mRNA regulators
Oncogene (2002) 21, pp 5619 - 5630

De Renzis S, Sönnichsen B and Zerial M
Divalent Rab effectors regulate the sub-compartmental organization and sorting of early endosomes
Nature Cell Biology (2002) 4, pp 124-133

Dzwinel W, Yuen DA and Boryczko K
Mesoscopic dynamics of colloids simulated with dissipative particle dynamics and fluid particle model
J Mol Model (2002) 8, pp 33-43

Edinger RS, Watkins SC, Pearce D and Johnson JP
Effect of immunosuppressive agents on glucocorticoid receptor function in A6 cells
Am J Physiol Renal Physiol (2002) 283, pp F254-F261

Engel U, Oezbek S, Engel R, Petri B, Lottspeich F and Holstein TW
Nowa, a novel protein with minicollagen Cys-rich domains, is involved in nematocyst formation in Hydra
Journal of Cell Science (2002) 115, pp

Estrach S, Schmidt S, Diriong S, Penna A, Blangy A, Fort P and Debant A
The Human Rho-GEF Trio and Its Target GTPase RhoG Are Involved in the NGF Pathway, Leading to Neurite Outgrowth
Current Biology (2002), Vol. 12, pp 307-312 get pdf(external link)

Furstoss O, Dorey K, Simon V, Barila D, Superti-Furga G and Roche S
c-Abl is an effector of Src for growth factor-induced c-myc expression and DNA synthesis
The EMBO Journal (2002) Vol 21 No 4 pp 514-524

Furuyashiki T, Arakawa Y, Takemoto-Kimura S, Bito H and Narumiya S
Multiple spatiotemporal modes of actin reorganization by NMDA receptors and voltage-gated Ca21 channels
PNAS (2002) vol.99 no. 22 pp

Gräf, R.
DdNek2, the first non-vertebrate homologue of human Nek2, is involved in the formation of microtubuleorganizing centers
Journal of Cell Science (2002) 115, pp
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Grünfelder CG, Engstler M, Weise F, Schwarz H, Stierhof Y-D, Boshart M and Overath P
Accumulation of a GPI-Anchored Protein at the Cell Surface Requires Sorting at Multiple Intracellular Levels
Traffic (2002), 3, pp 547-559

Haj FG, Verveer PJ, Squire A, Neel BG and Bastiaens PIH
Imaging Sites of Receptor Dephosphorylation by PTP1B on the Surface of the Endoplasmic Reticulum
Science (2002) pp

Hannus M, Feiguin F, Heisenberg C-F and Eaton S
Planar cell polarization requires Widerborst, a B' regulatory subunit of protein phosphatase 2A
Development (2002) 129, pp

Kern G, Bösch ST, Unterhuber E and Pelster B
Mechanisms of acid secretion in pseudobranch cells of rainbow trout Oncorhynchus
The Journal of Experimental Biology (2002) 205 pp 2943-2954

Koberna K, Malínský J, Pliss A, Masata M, Vecerová J, Fialová M, Bednár J and Raska I
Ribosomal genes in focus: new transcripts label the dense fibrillar components and form clusters indicative of "Christmas trees" in situ
The Journal of Cell Biology (2002) Volume 157, Number 5, pp 743-748 get pdf(external link)

de Krom M,van de Corput M, von Lindern M, Grosveld F and Strouboulis J
Stochastic Patterns in Globin Gene Expression Are Established prior to Transcriptional Activation and Are Clonally Inherited
Molecular Cell (2002) Vol. 9, pp
get pdf(external link)

Landmann, L.
Deconvolution improves colocalization analysis of multiple fluorochromes in 3D confocal data sets more than filtering techniques
Jo. Micr. (2002) V 208, Pt 2, pp 134-147

Li J, Pucéat M, Perez-Terzic C, Mery A, Nakamura K, Michalak M, Krause K-H and Jaconi ME
Calreticulin reveals a critical Ca2+ checkpoint in cardiac myofibrillogenesis
The Journal of Cell Biology (2002) Volume 158, Number 1, pp 103-113 get pdf(external link)

Malínský J, Koberna K, Bednár J, Stulík J and Raska I
Searching for active ribosomal genes in situ: light microscopy in light of the electron beam
Journal of Structural Biology (2002) 140 pp 227-231

Mary S, Charrasse S, Meriane M, Comunale F, Travo P, Blangy A and Gauthier-Rouvière C
Biogenesis of N-Cadherin-dependent Cell-Cell Contacts in Living Fibroblasts Is a Microtubuledependent Kinesin-driven Mechanism
Molecular Biology of the Cell Vol. (2002) 13, pp 285-301 get pdf(external link)

Polesello C, Delon I, Valenti P, Ferrer P and Payre F
Dmoesin controls actin-based cell shape and polarity during Drosophila melanogaster oogenesis
Nature Cell Biology (2002) 4, pp 782-789

Rehberg, M. and Gräf, R.
Dictyostelium EB1 Is a Genuine Centrosomal Component Required for Proper Spindle Formation
Molecular Biology of the Cell (2002) Vol. 13, pp
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Rothen-Rutishauser B, Riesen FK, Braun A, Gunthert M, Wunderli-Allenspach H.
Dynamics of tight and adherens junctions under EGTA treatment.
J Membr Biol. (2002) Jul 15;188(2):151-62

Stahl A, Evans JG, Pattel S, Hirsch D and Lodish HF
Insulin Causes Fatty Acid Transport Protein Translocation and Enhanced Fatty Acid Uptake in Adipocytes
Developmental Cell (2002) 2, pp 477-488

Verschure PJ, van der Kraan I, Enserink JM, Moné MJ, Manders EMM and van Driel R
Large-scale Chromatin Organization and the Localization of Proteins Involved in Gene Expression in Human Cells
J.Histochem.Cytochem. (2002) 50, pp

Verveer, PJ.
Comment on 'Generalized approach for accelerated maximum likelihood based image restoration applied to three-dimensional fluorescence microscopy', by L. H. Schaefer, D. Schuster and H. Herz, J. Microsc. 204,
Journal of Microscopy (2002), Vol. 208, Pt 1, pp 1-2

Wouterlood FG, Vinkenoog M and van den Oever M
Tracing tools to resolve neural circuits
Network: Comput. Neural Syst. (2002) 13, pp 327-342

Wouterlood FG, van Haeften T, Blijleven N, Perez-Templado P and Perez-Templado H
Double-Label Confocal Laser-Scanning Microscopy, Image Restoration, and Real-Time Three-Dimensional Reconstruction to Study Axons in the Central Nervous System and Their Contacts With Target Neurons
Applied Immunohistochemistry & Molecular Morphology (2002) 10(1), pp 85-95

Ziese U, Janssen AH, Murk J-L, Geerts WJC, van der Krift T , Verkleij AJ and Koster AJ
Automated high-throughput electron tomography by pre-calibration of image shifts
Journal of Microscopy (2002) Vol 205, Pt2, pp 187-200 get pdf(external link)


2001

L, Mittelman L, Tsarfaty I, Shiloh Y and Rotman G
Nuclear Retention of ATM at Sites of DNA Double Strand Breaks
The Journal Of Biological Chemistry (2001) Vol. 276, No. 41, pp

Arnaudeau S, Kelley WL, Walsh JV, Jr. and Demaurex N
Mitochondria Recycle Ca2+ to the Endoplasmic Reticulum and Prevent the Depletion of Neighboring Endoplasmic Reticulum Regions
The Journal Of Biological Chemistry (2001) Vol. 276, No. 31, pp
get pdf(external link)

Baertschi AJ, Monnier D, Schmidt U, Levitan ES, Fakan S and Roatti A
Acid Prohormone Sequence Determines Size, Shape, and Docking of Secretory Vesicles in Atrial Myocytes
Circ Res.(2001) 89:e23-e29

Bony C, Roche S, Shuichi U, Sasaki T, Crackower MA, Penninger J, Mano H and Pucéat M
A Specific Role of Phosphatidylinositol 3-Kinase g: A Regulation of Autonomic Ca2+ Oscillations in Cardiac Cells
The Journal of Cell Biology (2001) Volume 152, Number 4, pp 717-727 get pdf(external link)

Cau J, Faure S, Comps M, Delsert C and Morin N
A novel p21-activated kinase binds the actin and microtubule networks and induces microtubule stabilization
The Journal of Cell Biology (2001) Volume 155, Number 6, pp get pdf(external link)

Chen BK, Rousso I, Shim S and Kim PS
Efficient assembly of an HIV-1 MLV Gag-chimeric virus in murine cells
PNAS (2001) vol 98 no26 pp.
get pdf(external link)

Den Blaauwen T, Lindqvist A, Löwe J and Nanninga N
Distribution of the Escherichia coli structural maintenance of chromosomes (SMC)-like protein MukB in the cell
Molecular Microbiology (2001) 42(5), pp

Guild SB, Murray AT, Wilson ML, Wiegand UK, Apps DK, Jin Y, Rindler M, Roder J and Jeromin A
Over-expression of NCS-1 in AtT-20 cells affects ACTH secretion and storage
Molecular and Cellular Endocrinology (2001) 184, pp 51-63

Habermann FA, Cremer M, Walter J, Kreth G, von Hase J, Bauer K, Wienberg J, Cremer C, Cremer T and Solovei I
Arrangements of macro- and microchromosomes in chicken cells
Chromosome Research (2001) 9, pp 569-584 get pdf(external link)

Heun P, Laroche T, Raghuraman MK and Gasser SM
The Positioning and Dynamics of Origins of Replication in the Budding Yeast Nucleus
J Cell Biol (2001) 152, pp 385-400

Lengronne A, Pasero P, Bensimon A and Schwob E
Monitoring S phase progression globally and locally using BrdU incorporation in TK+ yeast strains
Nucleic Acids Research (2001) Vol 29, No 7 pp get pdf(external link)

Meesen G and Poffijn A
Semi-automated analysis of three-dimensional track images
Radiation Measurements (2001) 34 pp 161-165

Ogris M, Steinlein P, Carotta S, Brunner S and Wagner E
DNA/polyethylenimine transfection particles: Influence of ligands, polymer size, and PEGylation on internalization and gene expression
AAPS PharmSci (2001) 3 (3) article 21
get pdf(external link)

Perez-Terzic C, Gacy AM, Bortolon R, Dzeja PP, Puceat M, Jaconi M, Prendergast FG, and Terzic A
Directed Inhibition of Nuclear Import in Cellular Hypertrophy
THE JOURNAL OF BIOLOGICAL CHEMISTRY (2001) Vol. 276, No. 23, pp

Prem, C. and Pelster, B.
Swimbladder gas gland cells cultured on permeable supports regain their characteristic polarity
The Journal of Experimental Biology (2001) 204, pp

Rietdorf J, Ploubidou A, Reckmann I, Holmström A, Frischknecht F, Zettl M, Zimmermann T and Way M
Kinesin-dependent movement on microtubules precedes actin-based motility of vaccinia virus
Nature Cell Biology (2001) 3, pp 992 – 1000
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Rohrer, J. and Kornfeld, R.
Lysosomal Hydrolase Mannose 6-Phosphate Uncovering Enzyme Resides in the trans-Golgi Network
Molecular Biology of the Cell (2001) Vol 12, pp
get pdf(external link)

Rust RC, Landmann L, Gosert R, Luen Tang B, Hong W, Hauri H-P, Egger D and Bienz K
Cellular COPII Proteins Are Involved in Production of the Vesicles That Form the Poliovirus Replication Complex
Journal Of Virology (2001) Vol 75(20), pp

Sander A, Hesser BA and Witzemann V
MuSK induces in vivo acetylcholine receptor clusters in a ligand-independent manner
The Journal of Cell Biology (2001) Volume 155, Number 7, pp

Stanek D, Koberna K, Pliss A, Malínsky J, Masata M, Vecerová J, Risueño M-C and Raska I
Non-isotopic mapping of ribosomal RNA synthesis and processing in the nucleolus
Chromosoma (2001) 110, pp 460-470

Veraverbeke EA, Van Bruaene N, Van Oostveldt P and Nicolaï BM
Non destructive analysis of the wax layer of apple (Malus domestiva Borkh) by means of confocal laser scanning microscopy
Planta (2001) 213, pp 525-533

Verheggen C, Mouaikel J, Thiry M, Blanchard J-M, Tollervey D, Bordonné R, Lafontaine DLJ and Bertrand E
Box C/D small nucleolar RNA trafficking involves small nucleolar RNP proteins, nucleolar factors and a novel nuclear domain
The EMBO Journal (2001) Vol.20 N019 pp

Vietor I, Bader T, Paiha K and Huber LA
Peturbation of the tight junction permeability barrier by occludin loop peptides activates b-catenin/TCF/LEF-mediated transcription
EMBO reports (2001) vol 2, no 4, pp 306-312

Vignal E, Blangy A, Martin M, Gauthier-Rouvière C and Fort P
Kinectin Is a Key Effector of RhoG Microtubule-Dependent Cellular Activity
MOLECULAR AND CELLULAR BIOLOGY (2001) pp

Voermans C, Anthony EC, Mul E, van der Schoot E and Hordijk P
SDF-1-induced actin polymerization and migration in human hematopoietic progenitor cells
Experimental Hematology pp

Walther TC, Fornerod M, Pickergill H, Goldberg M, Allen TD and Mattaj IW
The nucleoporin Nup153 is required for nuclear pore basket formation, nuclear pore complex anchoring and import of a subset of nuclear proteins
The EMBO Journal (2001) Vol.20 pp

Wossink J, Karst H, Mayboroda O and Joëls M
Morphological And Functional Properties Of Rat Dentate Granule Cells After Adrenalectomy
Neuroscience Vol. (2001) 108, No. 2, pp 263-272

Wunderlich W, Fialka I, Teis D, Alpi A, Pfeifer A, Parton RG, Lottspeich F and Huber LA
A Novel 14-Kilodalton Protein Interacts with the Mitogen-activated Protein Kinase Scaffold MP1 on a Late Endosomal/Lysosomal Compartment
The Journal of Cell Biology (2001) Volume 152, Number 4, pp 765-776 get pdf(external link)


2000

Dukuzumuremyi J-M, Rosqvist R, Hallberg B, Åkerström B, Wolf-Watz H and Schesser K
The Yersinia Protein Kinase A Is a Host Factor Inducible RhoA/Rac-binding Virulence Factor
The Journal Of Biological Chemistry (2000) Vol. 275, No. 45, pp

Geissler H, Ullmann R and Soldati T
The Tail Domain of Myosin M Catalyses Nucleotide Exchange on Rac1 GTPases and Can Induce Actin-Driven Surface Protrusions
Traffic (2000) 1 pp 399-41

Frei C and Gasser SM
The yeast Sgs1p helicase acts upstream of Rad53p in the DNA replication checkpoint and colocalizes with Rad53p in S-phase-specific foci
Genes & Development (2000) 14 pp 81-96

Geissler H, Ullmann R and Soldati T
The Tail Domain of Myosin M Catalyses Nucleotide Exchange on Rac1 GTPases and Can Induce Actin-Driven Surface Protrusions
Traffic (2000) 1 pp 399-410

Hetzer M, Bilbao-Cortés D, Walther TC, Gruss OJ and Mattaj IW
GTP Hydrolysis by Ran Is Required for Nuclear Envelope Assembly
Molecular Cell (2000) 5: pp
get pdf(external link)

Hoek M, Engstler M and Cross GAM
Expression-site-associated gene 8 (ESAG8) of Trypanosoma bruceiis apparently essential and accumulates in the nucleolus
Journal of Cell Science (2000) 113, pp get pdf(external link)

Huber LA, Fialka I, Paiha K, Hunziker W, Sacks DB, Bähler M, Way M, Gagescu R and Gruenberg J
Both Calmodulin and the Unconventional Myosin Myr4 Regulate Membrane Trafficking Along the Recycling Pathway of MDCK Cells
Traffic (2000) 1: pp 494-503

Jiao J-H, Baumann P, Baron A, Roatti A, Pence RA and Baertschi AJ
Sulfonylurea receptor ligands modulate stretch-induced ANF secretion in rat atrial myocyte culture
Am J Physiol Heart Circ Physiol (2000) 278 pp H2028-H2038

Lang T, Wacker I, Wunderlich I, Rohrbach A, Giese G, Soldati T and Almers W
Role of Actin Cortex in the Subplasmalemmal Transport of Secretory Granules in PC-12 Cells
Biophysical Journal (2000) Volume 78 pp
get pdf(external link)

Langeveld SMJ, van Wijk R, Stuurman N, Klijne JW and de Pater S
B-type granule containing protrusions and interconnections between amyloplasts in developing wheat endosperm revealed by transmission electron microscopy and GFP expression
Journal of Experimental Botany (2000) Vol 51, No 349, pp

Loffing J, Pietri L, Aregger F, Bloch-Faure M, Ziegler U, Meneton P, Rossier BC and Kaissling B
Differential subcellular localization of ENaC subunits in mouse kidney in response to high- and low-Na diets
Am J Physiol Renal Physiol (2000) 279: F252-F258

Meyer N, Jaconi M, Landopoulou A , Fort P, Puceat M
A fluorescent reporter gene as a marker for ventricularspecification in ES-derived cardiac cells
FEBS Letters (2000) 478 pp 151-158
get pdf(external link)

Ogris M, Wagner E and Steinlein P
A versatile assay to study cellular uptake of gene transfer complexes by flow cytometry
Biochimica et Biophysica Acta pp 237-243

Osten P, Khatri L, Perez JL, Köhr G, Giese G, Daly C, Schulz TW, Wensky A, Lee LM and Ziff EB
Mutagenesis Reveals a Role for ABP/GRIP Binding to GluR2 in Synaptic Surface Accumulation of the AMPA Receptor
Neuron (2000) 27, pp 313-325

Prem C, Salvenmoser W, Würtz J and Pelster B
Swim bladder gas gland cells produce surfactant: in vivo and in culture
Am J Physiol Regulatory Integrative Comp Physiol (2000) 279, pp R2336-R2343

Rahner C, Stieger B and Landmann L
Apical endocytosis in rat hepatocytes in situ involves clathrin, traverses a subapical compartment, and leads to lysosomes
Gastroenterology (2000) 119, pp

Rothen-Rutishauser B, Braun A, Günthert M and Wunderli-Allenspach H
Formation of Multilayers in the Caco-2 Cell Culture Model: A Confocal Laser Scanning Microscopy Study
Pharmaceutical Research (2000), Vol. 17, No. 4, pp 460-465

Schwarz EC, Neuhaus EM, Kistler C, Henkel AW and Soldati T
Dictyostelium myosin IK is involved in the maintenance of cortical tension and affects motility and phagocytosis
J Cell Science (2000) 113, pp 621-633

Sönnichsen B, De Renzis S, Nielsen E, Rietdorf J and Zerial M
Distinct Membrane Domains on Endosomes in the Recycling Pathway Visualized by Multicolor Imaging of Rab4, Rab5, and Rab11
J Cell Biology (2000) 149, 4, pp 901-913
get pdf(external link)

Strohmaier AR, Porwol T, Acker H and Spiess E
Three-dimensional organization of microtubules in tumor cells studied by confocal laser scanning microscopy and computer-assisted deconvolution and image reconstruction
Cells Tissues Organs (2000);167(1) pp 1-8

Stuurman N, Pacios Bras C, Schlaman HRM, Wijfjes AHM, Bloemberg G, and Spaink HP
Use of Green Fluorescent Protein Color Variants Expressed on Stable Broad-Host-Range Vectors to Visualize Rhizobia Interacting with Plants
MPMI (2000) Vol. 13, No. 11 pp
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van der Velden HMW, Ausma J, Rook MB, Hellemons AJCGM, van Veen TAAB, Allessie MA, Jongsma HJ
Gap junctional remodeling in relation to stabilization of atrial fibrillation in the goat
Cardiovascular Research (2000) 46 pp 476-486

Vignal E, De Toledo M, Comunale F, Ladopouloui A, Gauthier-Rouvière C, Blangy A and Fort P
Characterization of TCL, a New GTPase of the Rho Family related to TC10 and Cdc42
The Journal of Biological Chemistry (2000) Vol 275, No 46, pp


1999

Broers JLV, Machiels BM, van Eys GJJM, Kuijpers HJH, Manders EMM, van Driel R and Ramaekers FCS
Dynamics of the nuclear lamina as monitored by GFP-tagged A-type lamins
J Cell. Science 112, (1999) pp

de Grauw CJ, Vroom JM, van der Voort HTM and Gerritsen HC
Imaging properties in two-photon excitation microscopy and effects of refractive-index mismatch in thick specimens
Applied Optics (1999) V 38, No.28, pp

Diaspro A, Corosu M, Ramoino P and Robello M
Adapting a Compact Confocal Microscope System to a Two-Photon Excitation Fluorescence Imaging Architecture
Microscopy Research and Technique (1999) 47, pp 196-205 get pdf(external link)

Fialka I, Steinlein P, Ahorn H, Böck G, Burbelo PD, Haberfellner M, Lottspeich F, Paiha K, Pasquali C and Huber LA
Identification of Syntenin as a Protein of the Apical Early Endocytic Compartment in Madin Darby Canine Kidney Cells
The Journal of Biological Chemistry (1999) Vol 274, No 37, pp

Merrifield CJ, Moss SE, Ballestrem C, Imhof BA, Giese G,Wunderlich I and Almers W
Endocytic vesicles move at the tips of actin tails in cultured mast cells
Nature Cell Biology (1999) Vol 1 No 1 pp 72-74
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Oliferenko S, Paiha K, Harder T, Gerke V, Schwärzler C, Schwarz H, Beug H, Günthert U and Huber LA
Analysis of CD44-containing Lipid Rafts: Recruitment of Annexin II and Stabilization by the Actin Cytoskeleton
J Cell Biology (1999) 147, 4, pp 843-854

Porwol T, Strohmaier A-R and Spiess E
Cytomography
Methods in Enzymology (1999) Vol 307 pp 108-118

Verschure PJ, van der Kraan I, Manders EMM and van Driel R
Spatial relationship between transcription sites and chromosome territories
J Cell Biology (1999) 147, 1, pp 13-24

Visser AE and Aten JA
Chromosomes as well as chromosomal subdomains constitute distinct units in interphase nuclei
J Cell Science (1999) 112, pp
get pdf(external link)

Yang S-H, Larsson O, Brändström R, Bertorello AM, Leiberger B, Leiberger IB, Moede T, Köhler M, Meister B and Berggren P-O
Syntaxin 1 interacts with the LD subtype of voltage-gated Ca2+ channels in pancreatic b cells
Proc Natl Acad Sci USA (1999) Vol 96, pp , Cell Biology


1998

Andersson H, Baechi T, Hoechl M and Richter C
Autofluorescence of living cells
Journal of microscopy (1998) Vol 191 Pt 1, pp 1-7

Buchenau P, Hodgson J, Strutt H and Arndt-Jovin DJ
The Distribution of Polycomb-Group Proteins During Cell Division and Development in Drosophila Embryos: Impact on Models for Silencing
J of Cell Biology (1998) 141, 2, 4 pp 69-481

Rothen-Rutishauser BM, Messerli MJ, van der Voort H, Guenthert M and Wunderli-Allenspach H
Deconvolution Combined with Digital Colocalization Analysis to Study the Spatial Distribution of Tight and Adherens Junction Proteins
Jo. of Computer-Assisted Micr. (1998) V10 No. 3, pp 103-111

Schrader M, Bahlmann K, Giese G and Hell SW
4Pi-Confocal Imaging in Fixed Biological Specimens
Biophysical Journal (1998) Volume 75 pp get pdf(external link)

Schrader M, Hell SW and van der Voort HTM
Three-dimensional super-resolution with a 4Pi-confocal microscope using image restoration
Journal Of Applied Physics (1998) Volume 84, Number 8 pp get pdf(external link)

Sytsma J, Vroom JM, De Grauw CJ and Gerritsen HC
Time-gated fluorescence lifetime imaging and microvolume spectroscopy using two photon excitation
Journal of Microscopy (1998) Vol 191 Pt1 pp 39-51


1997

Andersson H, Baechi T, Hoechli M, Larsson B, Nievergelt C, Richter C and Swedberg
Autofluorescence as indicator of viability of living cells
XXXIX Symposium of the Society for Histochemistry 24-27 September 1997, Jena, Germany
Histochem Cell Biol (1997) 108 pp 257-285

Hell SW, Schrader M and Van Der Voort HTM
Far-Field fluorescence microscopy with three-dimensional resolution in the 100-nm Range
Journal of Microscopy (1997) Vol 187 Pt1, pp 1-7


1996

Kano H, van der Voort HTM, Schrader M, van Kempen GMP and Hell SW
Avalanche photodiode detection with object scanning and image restoration provides 2-4 fold resolution increase in two-photon fluorescence microscopy
Bioimaging 4 (1996) pp 187-197 get pdf(external link)

van Kempen GMP, van der Voort HTM and van Vliet LJ
A quantitative comparison of two restoration methods as applied to confocal microscopy
Journal of Microscopy (1997), Volume 185, no. 3, Pages 354 - 365. Image JoM97GKLVea.pdf



1990

van der Voort HTM and Brakenhoff GJ
3-D image formation in high-aperture fluorescence confocal microscopy: a numerical analysis
Bioimaging 4 (1996) pp 187-197
Journal of Microscopy, April 1990, Volume 158 (1): 43–54(external link)
This paper shows the need to take object orientation into account when segmenting or analyzing microscopic images.


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SVI Huygens at RMS Facility Managers Meeting Cambridge, UK
2)  Wed 25 of Feb., 2015 09:00 CET
SVI-Huygens at superresolution g-STED symposium Innsbruck
3)  Sun 29 of Mar., 2015 12:21 CEST
SVI at FOM 2015 Goettingen, Germany
4)  Thu 23 of Apr., 2015 15:00 CEST
Huygens imaging course April 2015
5)  Tue 19 of May, 2015 11:59 CEST
Huygens Workshops and Booth at ELMI 2015 Sitges, Barcelona

Contact Information

Scientific Volume Imaging B.V.

Laapersveld 63
1213 VB Hilversum
The Netherlands


Phone: +31 (0)35 64216 26
E-mail: info at svi.nl